| Protein ZmBSD6 | |
|---|---|
|
ZmBSD6 is a protein in the BSD family.
|
|
| Information | |
| TF Name: | ZmBSD6 |
| Species: | Maize |
| TF Family: | BSD |
| Gene Name(Synonym): | BSDTF6 |
| Uniprot ID: | C0PD33 |
| Subgenome: | 1 |
Protein ZmBSD6
ZmBSD6 is a protein in the BSD family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03909 | |
| Zm00001eb253320_T001 |  |
| Zm00001eb253320_T002 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d017905 | DAPseq |  |
sequence | fimo | position |
| Zm00001d017905 | DAPseq |  |
sequence | fimo | position |
| Zm00001d017905 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d017905 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmBSD6 is the regulator
Interactions where ZmBSD6 is the target
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Zm00001eb253320_T001 from maize genome v5
Amino Acid Sequence
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MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03909 |
|
| PF03909 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CTCCCGTCCCGCACCGACGTCGACG...
CTCCCGTCCCGCACCGACGTCGACGGAGACGTGTCACTGGCGGCGTTGAGAAGACAGAAGACTTCAGACCTTCTAGATTTTTTCCCGGCCGCAATGGATCTCTGGGAGAGGGCCCGGGCCTTCGCCGGCGAGGCGGCGAATTGGTCGCAGGAGCTCTCCGCGGAGGCGACCAAGCGCTCGTCTGCGCTGGTCTCGGAGACGGCGAAGAAGTCGAAGGAGATCTTTTCCGAGACCGCCTCCAAGTCGCTGGAGATCGCCGCCGAGGCAACCAAGCAGGCCGACCTCCTGGCCGGCCAGATCAAGCACCTCGCCTCCGACATCCCCGTACCCTCGATCCCACCCATCCCCGCGATCCCACCTATCGCCGCCACTGCCTCGTCGGAGCCCGACGCGGCCGAGCTTGAGCGCTACGGCATCACCGACGACCTCCGCGAGTTCGTCAAGGACATGACCATAAGCACCTTCCGCGACTTCCCACTGCAAGATGAGCCTGAAATGTCTGATGTGCCAACGGTGTCGAATGTGCGTCAGGATCTGAGCGAATGGCAGGCCAGGCACGCCACACTTGTCCTCTCGGCAGTCAAGGAAATATCGAAGTTCAGATATGAGCTATGCCCAAGATACATGAAAGAGCGCAAATTCTGGCGGGTATATTTTTTGCTAGTAAACAGCTATATAGCCCCGTTCGAGAAGAAATCCTTGGAGGAGCTGAAAGTGAAAGCAGAGGAAGAGAAAAGGGATTCCCAGAAGCAAGCATCCCAGGCATCTACAACTTTCGAACCCAAAGACACAAAAGCGCCAATCAAGACCTCTTCAACAAATCCAGAACATGATCTGGATGTATTTCTTCTGGGAGATCTGGGTAGCGACGATGAGGGACCTGTTGATGATGATGATGACCTAGATGAGGACTTCGATAAGATTGATGTGACCACGGGATTGGAAAGTGATGACGATGACAAAAAAATAGCAACAGGGAAAGCAGAAGATGCGAAGTAGTAGCCTATGGTTTTACGATTCGACAGATGACCACAATGATAGCGAACTTTAGTATTCCAAGATGGTATTGTATATTAGTTGATCGCATGTCATCAATTCATTTGTTATCACCCAGAAAAGGATGTTAAACACTTGTTTTTTTTACAACTTTCGATTTTTAACTAAACTCACACATCTTATCGATGTTGTGACTCCTCTTTTCTTATTAGGAGTTTTCTGCATATGTACTAGTCTATCTATTGAATTGAACTTCAGTACGACTACTCGAGGCTACAATTTACATGAAATACCGGTGTGTGAAGAATAGAAGATAATACATTTAA
GRMZM2G145594_T01 from maize genome v3
Amino Acid Sequence
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MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
Nucleotide Sequence
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AGCGCTAAAACACCCCCTCCCGTCC...
AGCGCTAAAACACCCCCTCCCGTCCCGCACCGACGTCGACGGAGACGTGTCACTGGCGGCGTTGAGAAGACAGAAGACTTCAGACCTTCTAGATTTTTTCCCGGCCGCAATGGATCTCTGGGAGAGGGCCCGGGCCTTCGCCGGCGAGGCGGCGAATTGGTCGCAGGAGCTCTCCGCGGAGGCGACCAAGCGCTCGTCTGCGCTGGTCTCGGAGACGGCGAAGAAGTCGAAGGAGATCTTTTCCGAGACCGCCTCCAAGTCGCTGGAGATCGCCGCCGAGGCAACCAAGCAGGCCGACCTCCTGGCCGGCCAGATCAAGCACCTCGCCTCCGACATCCCCGTACCCTCGATCCCACCCATCCCCGCGATCCCACCTATCGCCGCCACTGCCTCGTCGGAGCCCGACGCGGCCGAGCTTGAGCGCTACGGCATCACCGACGACCTCCGCGAGTTCGTCAAGGACATGACCATAAGCACCTTCCGCGACTTCCCACTGCAAGATGAGCCTGAAATGTCTGATGTGCCAACGGTGTCGAATGTGCGTCAGGATCTGAGCGAATGGCAGGCCAGGCACGCCACACTTGTCCTCTCGGCAGTCAAGGAAATATCGAAGTTCAGATATGAGCTATGCCCAAGATACATGAAAGAGCGCAAATTCTGGCGGGTATATTTTTTGCTAGTAAACAGCTATATAGCCCCGTTCGAGAAGAAATCCTTGGAGGAGCTGAAAGTGAAAGCAGAGGAAGAGAAAAGGGATTCCCAGAAGCAAGCATCCCAGGCATCTACAACTTTCGAACCCAAAGACACAAAAGCGCCAATCAAGACCTCTTCAACAAATCCAGAACATGATCTGGATGTATTTCTTCTGGGAGATCTGGGTAGCGACGATGAGGGACCTGTTGATGATGATGATGACCTAGATGAGGACTTCGATAAGATTGATGTGACCACGGGATTGGAAAGTGATGACGATGACAAAAAAATAGCAACAGGGAAAGCAGAAGATGCGAAGTAGTAGCCTATGGTTTTACGATTCGACAGATGACCACAATGATAGCGAACTTTAGTATTCCAAGATGGTATTGTATATTAGTTGATCGCATGTCATCAATTCATTTGTTATCACCCAGAAAAGGATGTTAAACACTTGTTTTTTTTACAACTTTCGATTTTTAACTAAACTCACACATCTTATCGATGTTGTGACTCCTCTTTTCTTATTAGGAGTTTTCTGCATATGTACTAGTCTATCTATTGAATTGAACTTCAGTACGACTACTCGAGGCTACAATTTACATGAAATACCGGTGTGTGAAGAATAGAAGAT
GRMZM2G145594_T02 from maize genome v3
Amino Acid Sequence
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MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARKYRSSD
MSYAQDT
Nucleotide Sequence
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AGCGCTAAAACACCCCCTCCCGTCC...
AGCGCTAAAACACCCCCTCCCGTCCCGCACCGACGTCGACGGAGACGTGTCACTGGCGGCGTTGAGAAGACAGAAGACTTCAGACCTTCTAGATTTTTTCCCGGCCGCAATGGATCTCTGGGAGAGGGCCCGGGCCTTCGCCGGCGAGGCGGCGAATTGGTCGCAGGAGCTCTCCGCGGAGGCGACCAAGCGCTCGTCTGCGCTGGTCTCGGAGACGGCGAAGAAGTCGAAGGAGATCTTTTCCGAGACCGCCTCCAAGTCGCTGGAGATCGCCGCCGAGGCAACCAAGCAGGCCGACCTCCTGGCCGGCCAGATCAAGCACCTCGCCTCCGACATCCCCGTACCCTCGATCCCACCCATCCCCGCGATCCCACCTATCGCCGCCACTGCCTCGTCGGAGCCCGACGCGGCCGAGCTTGAGCGCTACGGCATCACCGACGACCTCCGCGAGTTCGTCAAGGACATGACCATAAGCACCTTCCGCGACTTCCCACTGCAAGATGAGCCTGAAATGTCTGATGTGCCAACGGTGTCGAATGTGCGTCAGGATCTGAGCGAATGGCAGGCCAGGAAATATCGAAGTTCAGATATGAGCTATGCCCAAGATACATGAAAGAGCGCAAATTCTGGCGGGTATATTTTTTGCTAGTAAACAGCTATATAGCCCCGTTCGAGAAGAAATCCTTGGAGGAGCTGAAAGTGAAAGCAGAGGAAGAGAAAAGGGATTCCCAGAAGCAAGCATCCCAGGCATCTACAACTTTCGAACCCAAAGACACAAAAGCGCCAATCAAGACCTCTTCAACAAATCCAGAACATGATCTGGATGTATTTCTTCTGGGAGATCTGGGTAGCGACGATGAGGGACCTGTTGATGATGATGATGACCTAGATGAGGACTTCGATAAGATTGATGTGACCACGGGATTGGAAAGTGATGACGATGACAAAAAAATAGCAACAGGGAAAGCAGAAGATGCGAAGTAGTAGCCTATGGTTTTACGATTCGACAGATGACCACAATGATAGCGAACTTTAGTATTCCAAGATGGTATTGTATATTAGTTGATCGCATGTCATCAATTCATTTGTTATCACCCAGAAAAGGATGTTAAACACTTGTTTTTTTTACAACTTTCGATTTTTAACTAAACTCACACATCTTATCGATGTTGTGACTCCTCTTTTCTTATTAGGAGTTTTCTGCATATGTACTAGTCTATCTATTGAATTGAACTTCAGTACGACTACTCGAGGCTACAATTTACATGAAATACCGGTGTGTGAAGAATAGAAGAT
Zm00001d017905_T001 from maize genome v4
Amino Acid Sequence
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MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTGLESDDDDKKIATGKAEDAK
Nucleotide Sequence
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CGTCCCGCACCGACGTCGACGGAGA...
CGTCCCGCACCGACGTCGACGGAGACGTGTCACTGGCGGCGTTGAGAAGACAGAAGACTTCAGACCTTCTAGATTTTTTCCCGGCCGCAATGGATCTCTGGGAGAGGGCCCGGGCCTTCGCCGGCGAGGCGGCGAATTGGTCGCAGGAGCTCTCCGCGGAGGCGACCAAGCGCTCGTCTGCGCTGGTCTCGGAGACGGCGAAGAAGTCGAAGGAGATCTTTTCCGAGACCGCCTCCAAGTCGCTGGAGATCGCCGCCGAGGCAACCAAGCAGGCCGACCTCCTGGCCGGCCAGATCAAGCACCTCGCCTCCGACATCCCCGTACCCTCGATCCCACCCATCCCCGCGATCCCACCTATCGCCGCCACTGCCTCGTCGGAGCCCGACGCGGCCGAGCTTGAGCGCTACGGCATCACCGACGACCTCCGCGAGTTCGTCAAGGACATGACCATAAGCACCTTCCGCGACTTCCCACTGCAAGATGAGCCTGAAATGTCTGATGTGCCAACGGTGTCGAATGTGCGTCAGGATCTGAGCGAATGGCAGGCCAGGCACGCCACACTTGTCCTCTCGGCAGTCAAGGAAATATCGAAGTTCAGATATGAGCTATGCCCAAGATACATGAAAGAGCGCAAATTCTGGCGGGTATATTTTTTGCTAGTAAACAGCTATATAGCCCCGTTCGAGAAGAAATCCTTGGAGGAGCTGAAAGTGAAAGCAGAGGAAGAGAAAAGGGATTCCCAGAAGCAAGCATCCCAGGCATCTACAACTTTCGAACCCAAAGACACAAAAGCGCCAATCAAGACCTCTTCAACAAATCCAGAACATGATCTGGATGTATTTCTTCTGGGAGATCTGGGTAGCGACGATGAGGGACCTGTTGATGATGATGATGACCTAGATGAGGACTTCGATAAGATTGATGTGACCACGGGATTGGAAAGTGATGACGATGACAAAAAAATAGCAACAGGGAAAGCAGAAGATGCGAAGTAGTAGCCTATGGTTTTACGATTCGACAGATGACCACAATGATAGCGAACTTTAGTATTCCAAGATGGTATTGTATATTAGTTGATCGCATGTCATCAATTCATTTGTTATCACCCAGAAAAGGATGTTAAACACTTGTTTTTTTTACAACTTTCGATTTTTAACTAAACTCACACATCTTATCGATGTTGTGACTCCTCTTTTCTTATTAGGAGTTTTCTGCATATGTACTAGTCTATCTATTGAATTGAACTTCAGTACGACTACTCGAGGCTACAATTTACATGAAATACCGGTGTGTGAAGAATAGAAGATAATACATTT
Zm00001eb253320_T002 from maize genome v5
Amino Acid Sequence
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MDLWERARAFAGEAANWSQELSAEATKRSSALVSETAKKSKEIFSETASKSLEIAAEATKQADLLAGQIKHLASDIPVPS
IPPIPAIPPIAATASSEPDAAELERYGITDDLREFVKDMTISTFRDFPLQDEPEMSDVPTVSNVRQDLSEWQARHATLVL
SAVKEISKFRYELCPRYMKERKFWRVYFLLVNSYIAPFEKKSLEELKVKAEEEKRDSQKQASQASTTFEPKDTKAPIKTS
STNPEHDLDVFLLGDLGSDDEGPVDDDDDLDEDFDKIDVTTDVELQGDPIAIKM
Nucleotide Sequence
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CTCCCGTCCCGCACCGACGTCGACG...
CTCCCGTCCCGCACCGACGTCGACGGAGACGTGTCACTGGCGGCGTTGAGAAGACAGAAGACTTCAGACCTTCTAGATTTTTTCCCGGCCGCAATGGATCTCTGGGAGAGGGCCCGGGCCTTCGCCGGCGAGGCGGCGAATTGGTCGCAGGAGCTCTCCGCGGAGGCGACCAAGCGCTCGTCTGCGCTGGTCTCGGAGACGGCGAAGAAGTCGAAGGAGATCTTTTCCGAGACCGCCTCCAAGTCGCTGGAGATCGCCGCCGAGGCAACCAAGCAGGCCGACCTCCTGGCCGGCCAGATCAAGCACCTCGCCTCCGACATCCCCGTACCCTCGATCCCACCCATCCCCGCGATCCCACCTATCGCCGCCACTGCCTCGTCGGAGCCCGACGCGGCCGAGCTTGAGCGCTACGGCATCACCGACGACCTCCGCGAGTTCGTCAAGGACATGACCATAAGCACCTTCCGCGACTTCCCACTGCAAGATGAGCCTGAAATGTCTGATGTGCCAACGGTGTCGAATGTGCGTCAGGATCTGAGCGAATGGCAGGCCAGGCACGCCACACTTGTCCTCTCGGCAGTCAAGGAAATATCGAAGTTCAGATATGAGCTATGCCCAAGATACATGAAAGAGCGCAAATTCTGGCGGGTATATTTTTTGCTAGTAAACAGCTATATAGCCCCGTTCGAGAAGAAATCCTTGGAGGAGCTGAAAGTGAAAGCAGAGGAAGAGAAAAGGGATTCCCAGAAGCAAGCATCCCAGGCATCTACAACTTTCGAACCCAAAGACACAAAAGCGCCAATCAAGACCTCTTCAACAAATCCAGAACATGATCTGGATGTATTTCTTCTGGGAGATCTGGGTAGCGACGATGAGGGACCTGTTGATGATGATGATGACCTAGATGAGGACTTCGATAAGATTGATGTGACCACGGATGTGGAGTTGCAGGGTGATCCTATAGCTATCAAAATGTAGCATCGTTGTTTTCCATGGAATCTGTACGCGTTATTTTTCATGCTACGGGATTGGAAAGTGATGACGATGACAAAAAAATAGCAACAGGGAAAGCAGAAGATGCGAAGTAGTAGCCTATGGTTTTACGATTCGACAGATGACCACAATGATAGCGAACTTTAGTATTCCAA
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